Andrew Davison

Andrew Davison

Research Scientist
Unité de Neurosciences Intégratives et Computationnelles (UNIC)
Institut de Neurobiologie Alfred Fessard
Centre Nationale de la Recherche Scientifique
1 Avenue de la Terrasse, F-91198 Gif sur Yvette, France
e-mail address

Background

I am a research scientist in the Unité de Neurosciences Intégratives et Computationnelles (UNIC) at the Gif sur Yvette campus of the CNRS, near Paris, France. I am working on the FACETS project, developing biologically-detailed models of primary visual cortex. Prior to this, I did my PhD in computational neuroscience with Dr Jianfeng Feng at The Babraham Institute (Cambridge), then a postdoc in the laboratory of Prof. Gordon Shepherd at Yale University School of Medicine, researching the encoding and processing of olfactory information in the olfactory epithelium and olfactory bulb, and working on the ModelDB database of neuronal models, then a postdoc at UNIC, working on the SenseMaker project.

Publications

Frégnac Y, Rudolph M, Davison A.P. and Destexhe A. (2007) Complexity in Neuronal Networks. In: Biological Networks, edited by François Képès, World Scientific: , pp. 1-.

R. Brette and 21 others (2007) Simulation of networks of spiking neurons: A review of tools and strategies. Journal of Computational Neuroscience 23: 349-398. [Abstract] [Preprint from arXiv] [get the models from ModelDB] [PubMed]

Davison A.P. and Frégnac Y. (2006) Learning crossmodal spatial transformations through spike-timing-dependent plasticity. The Journal of Neuroscience 26: 5604-5615. [Abstract] [get the model from ModelDB] [PubMed] [full text]

Badoual M., Zou Q., Davison A.P., Rudolph M., Bal T., Frégnac Y. and Destexhe A. (2006) Biophysical and phenomenological models of multiple spike interactions in spike-timing dependent plasticity. International Journal of Neural Systems 16: 79-97. [Abstract] [PubMed] [full text]

Davison A.P. (2004) Biologically-detailed network modelling. In: Computational Neuroscience: A Comprehensive Approach, edited by J. Feng, Chapman and Hall/CRC Press: Boca Raton, pp. 287-304.

Davison A.P., Feng J. and Brown D. (2003) Dendrodendritic inhibition and simulated odor responses in a detailed olfactory bulb network model. Journal of Neurophysiology 90: 1921-1935. [Abstract] [get the model from ModelDB] [PubMed] [full text]

Davison A.P. and Shepherd G.M. (2002) Olfactory Bulb. In: The Handbook of Brain Theory and Neural Networks, 2nd Edn, edited by M. Arbib, The MIT Press: Cambridge, MA.

Davison A.P., Morse T.M., Migliore M., Marenco L., Shepherd G.M. and Hines M.L. (2002) ModelDB: A Resource for Neuronal and Network Modeling. In: Neuroscience Databases: A Practical Guide, edited by R. Kötter, Kluwer Academic Publishers: Norwell, MA, pp. 99-109. [Abstract]

Davison A.P. (2001) Mathematical modelling of information processing in the olfactory bulb. Ph.D. thesis, University of Cambridge. [Abstract] [PDF]

Davison A.P., Feng J. and Brown D. (2000) A reduced compartmental model of the mitral cell for use in network models of the olfactory bulb. Brain Research Bulletin 51: 393-399. [Abstract] [get the model from ModelDB] [PubMed] [full text]

Conference
presentations

Davison A.P., Yger P., Kremkow J., Perrinet L. and Muller E. (2007) PyNN: Towards a universal neural simulator API in Python. CNS*2007, Toronto, July 2007. [Abstract]

Davison A.P. (2006) Simulator-independent network modelling with Python and XML. Modeling the Brain's Labyrinth, Fodele, Crete, Greece, September 2006. [Abstract]

Davison A.P., Yger P., Chan J.S., Newell F.N. and Frégnac Y. (2006) A combined psychophysical-modelling study of the mechanisms of tactile picture perception. CNS*2006, Edinburgh, U.K, July 2006. [Abstract]

Davison A.P. (2006) NModLib: a database of components for neuroscience models. World Association of Modeling - Biologically Accurate Modeling Meeting, San Antonio, Texas, March 2006. [Abstract]

Davison A.P., Belatreche A., Fieres J., Chan J.S., Newell F.N. and Frégnac Y. (2005) The Two-Ring paradigm: a computational approach to multisensory code binding. International SenseMaker Workshop on Life-Like Perception Systems, Derry, U.K, April 2005. [Abstract]

Davison A.P. and Frégnac Y. (2004) Training a network of spiking neurons to perform coordinate transformations. Society for Neuroscience Annual Meeting, San Diego, California, November 2004.

Davison A.P. (2004) Learning simple computations in spiking basis function networks using spike time-dependent plasticity. FENS, Lisbon, Portugal, June 2004. [Abstract]

Davison A.P., Hines M.L. and Shepherd G.M. (2002) Membrane bistability and sub-threshold oscillations in an olfactory bulb mitral cell model. AChemS XXIV, Sarasota, Florida, April 2002.

Davison A.P., Zhou Z., Hines M.L. and Shepherd G.M. (2001) Simulating sodium and potassium currents in an olfactory mitral cell model. Society for Neuroscience Annual Meeting, San Diego, California, November 2001. [Abstract]

Davison A.P. and Feng J. (2001) A model of network interactions in the olfactory bulb. AChemS XXIII, Sarasota, Florida, April 2001. [Abstract]

Davison A.P., Feng J. and Brown D. (2000) Spike synchronization in a biophysically-detailed model of the olfactory bulb. CNS*00, Brugge, Belgium, July 2000. [Abstract]

Davison A.P., Feng J. and Brown D. (1999) Structure of lateral inhibition in an olfactory bulb model. IWANN'99, Alicante, Spain, June 1999. [Abstract]

Davison A.P., Miller T., Belton I., Bolton S. and Bonnett D.E. (1997) An assessment of image registration in the treatment planning of tumours of the brain. Radiology 1997 - Imaging, Science and Oncology, Birmingham, U.K, May 1997.

Notes

Modelling single cells in NEURON with the Python interpreter

Installation of NEURON with Python

Accessing hoc from Python

Modelling STDP in the NEURON simulator